The difference between Canon of Creation and Vengeance in Shin Megami Tensei V Vengeance and where to start

After all these years Nintendo has finally released the "official timeline" in the Legend of Zelda art book, however this may NOT be correct.

Skyward Sword
Minish Cap
Four Swords
Ocarina of Time (Split in to three time lines)
-A: Where the Hero of Time fails
-B: Where the Hero of Time is sent back 7 years
-C: Where the Hero of Time Wins (future)

A
Link to the Past
Oracle of Seasons/Oracle of Ages
Link's Awakening
The Legend of Zelda
Zelda II: The Adventure of Link

B
Majora's Mask
Twilight Princess
Four Swords Adventures

C
The Wind Waker
Phantom Hourglass
Spirit Tracks
As you can tell these timelines are grouped together based on when the games were released. Group A is the original games, Group B follows OoT, and Group C follows Wind Waker. Really none of this adds up. If you have ever played the games you'll notice a few different key events that tie each game together, but this timeline completely splits them appart!
Nintendo has released timelines before, and they have also said that they were incorrect before. Maybe the same thing will happen to this one? Guess we'll just have to wait and see.